Recent changes to feature-requests

option for uploading list of genes and there expression value

Anonymous — Sat, 23 Jul 2022 07:21:10 -0000

If possible, in the next update could you please provide an option for uploading the list of genes with there expression value for simulation purpose. A facility similar to uploading the environmental constrain but for gene under and over expression.

#61 Infeasible Problem Error Message

Paulo Maia — Mon, 30 May 2022 11:12:01 -0000

Hi Zahra, can you please attach the model so I take a look at it?
It's difficult to assess the possible problems without it :)

Kind regards,
Paulo

Infeasible Problem Error Message

Anonymous — Mon, 30 May 2022 10:56:35 -0000

Dear OptFlux Team,

I hope you are well.

I am getting in touch with you regarding conducting Wild Type simulations on OptFlux. I have generated a network using COPASI, and have exported said network as an xml file. I have tried loading this into OptFlux, which was successfully carried out. I am however, receiving an ‘Infeasible Problem’ error message when attempting to run simulations. I have the OptFlux3.4 version, and Java version 7 downloaded on my Mac.

Can you please kindly guide me on potential causes for this error message that I can investigate?

Thank you for your time and guidance.

Kind regards,
Zahra

#60 Bug Creating Environmental condition

Paulo Maia — Thu, 08 Feb 2018 14:13:45 -0000

status: open --> accepted
assigned_to: Paulo Maia

#60 Bug Creating Environmental condition

Paulo Maia — Thu, 08 Feb 2018 14:13:34 -0000

Olá, qual o sistema operativo que está a utilizar? (e no caso de ser linux, qual o gestor de janelas).
cumprimentos,
Paulo Maia

Bug Creating Environmental condition

Anonymous — Thu, 08 Feb 2018 14:04:30 -0000

Ticket 60 has been modified: Bug Creating Environmental condition
Edited By: Paulo Maia (paulo-maia)
Status updated: u'open' => u'accepted'
Owner updated: None => u'paulo-maia'

Bug Creating Environmental condition

Anonymous — Thu, 08 Feb 2018 14:04:30 -0000

Boa Tarde,

Ao tentar adicionar uma environmental condition no OptFlux 3.3.5 aparece-me uma janela branca que nunca desenvolve nada. Foi me referido que podia ser do java pelo que reinstalei tudo e mesmo assim continua a não funcionar. Poderiam me indicar outra solução?

#59 Force stop in Optimization operation

Hugo Giesteira — Tue, 05 Apr 2016 10:18:23 -0000

status: open --> closed

Force stop in Optimization operation

Hugo Giesteira — Wed, 16 Mar 2016 10:52:05 -0000

The button that exists in the optimization progress window does not completely stop the operation, it just stops the optimization phase and after that it simplifies all the solutions found. Also, after the simplification a datatype is created with those simplified solutions.
The major problem with this stop is that sometimes there is a big number of solutions to be simplified which can take too much time and the user just keeps pressing the stop button and nothing really stops.
A new button could be added, a force stop button that completely ended the operation.
Also this stop button could be added to another OptFlux's operations.

Force stop in Optimization operation

Hugo Giesteira — Wed, 16 Mar 2016 10:52:05 -0000

Ticket 59 has been modified: Force stop in Optimization operation
Edited By: Hugo Giesteira (hugogiesteira)
Status updated: u'open' => u'closed'