GAAS (Genome relative Abundance and Average Size) is a bioinformatic tool to calculate accurate community composition and average genome size in metagenomes by using BLAST, advanced parsing of hits and correction of genome length bias.

Features

  • FASTA as input, graphs as output
  • Normalization by genome length
  • Weighting of similarities
  • Statistical intervals of confidence

Project Samples

Convergence of the bootstrapped estimates Flowchart Community comparison Standard method VS GAAS Visualization on a tree

Project Activity

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Categories

Bio-Informatics

License

GNU General Public License version 2.0 (GPLv2)

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Additional Project Details

Intended Audience

Science/Research

User Interface

Console/Terminal

Programming Language

Perl

Related Categories

Perl Bio-Informatics Software

Registered

2008-11-03
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