Audience

Researchers and scientists interested in a solution to analyze proteins and deduce their structural alignments

About Swiss-PdbViewer

Swiss-PdbViewer (aka DeepView) is an application that provides a user-friendly interface allowing to analysis of several proteins at the same time. The proteins can be superimposed in order to deduce structural alignments and compare their active sites or any other relevant parts. Amino acid mutations, H-bonds, angles, and distances between atoms are easy to obtain thanks to the intuitive graphic and menu interface. Swiss-PdbViewer (aka DeepView) has been developed since 1994 by Nicolas Guex. Swiss-PdbViewer was initially tightly linked to SWISS-MODEL, an automated homology modeling server developed within the Swiss Institute of Bioinformatics (SIB) at the Structural Bioinformatics Group at the Biozentrum in Basel. However, the SWISS-MODEL web interface evolved to a point where it is now possible to use it directly for advanced modeling. Maintaining a direct interface with Swiss-PdbViewer is too complex and no longer supported.

Other Popular Alternatives & Related Software
SwissSign
SwissSign
SwissSign enables you to make your processes and business transactions even more efficient by allowing customers and employees to sign easily online. Signature service by SwissSign: The Swiss signature solution from SwissSign offers qualified electronic signatures (QES) which are ZertEs (Swiss Signature Act) and eIDAS compliant as well as advanced (AES) and simple electronic signatures (SES). The solution that suits your needs: Regardless of whether you are a private individual, SME or large company, SwissID Sign offers the right solution for you. SwissSign offers a Ready-to-Go solution (no integration necessary) and an integration solution (cloud) based on “SwissID Sign”. For companies that require a flexible and confidential solution SwissSign recommends its On-premise solution “Let’s Sign”.
Learn more about SwissSign
Avogadro
Avogadro
Avogadro is an advanced molecule editor and visualizer designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. It offers flexible high quality rendering and a powerful plugin architecture. Avogadro is a free, open-source molecular editor and visualization tool, designed for use on Mac, Windows, and Linux in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. It offers flexible high quality rendering and a powerful plugin architecture.
Learn more about Avogadro
Evo 2
Evo 2
Evo 2 is a genomic foundation model capable of generalist prediction and design tasks across DNA, RNA, and proteins. It utilizes a frontier deep learning architecture to model biological sequences at single-nucleotide resolution, achieving near-linear scaling of compute and memory relative to context length. Trained with 40 billion parameters and a 1 megabase context length, Evo 2 processes over 9 trillion nucleotides from diverse eukaryotic and prokaryotic genomes. This extensive training enables Evo 2 to perform zero-shot function prediction across multiple biological modalities, including DNA, RNA, and proteins, and to generate novel sequences with plausible genomic architecture. The model's capabilities have been demonstrated in tasks such as designing functional CRISPR systems and predicting disease-causing mutations in human genes. Evo 2 is publicly accessible via Arc's GitHub repository and is integrated into the NVIDIA BioNeMo framework.
Learn more about Evo 2
HyperProtein
HyperProtein
HyperProtein is Hypercube, Inc.'s new product focusing on the computational science associated with protein sequences. The product includes the analysis of one-dimensional protein sequences as well as the analysis of consequent three-dimensional protein structures. In particular, the relationship between sequence and structure is a fundamental facet of the product. Unlike individual software programs that provide capability for some aspect of protein sequence or structure, such as sequence alignment, HyperProtein puts together a multitude of Bioinformatics and Molecular Modeling tools related to the science that initiates with a protein sequence.
Learn more about HyperProtein

Integrations

No integrations listed.

Ratings/Reviews

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software

Company Information

Swiss-PdbViewer
Founded: 1994
Switzerland
spdbv.unil.ch/

Videos and Screen Captures

Swiss-PdbViewer Screenshot 1
Swiss-PdbViewer Screenshot 1 Swiss-PdbViewer Screenshot 2
Other Useful Business Software
$300 Free Credits to Build on Google Cloud Icon
$300 Free Credits to Build on Google Cloud

New customers can spin up VMs, build with AI, and query data at no cost.

Put your $300 in credit toward real workloads, then keep building with free monthly usage for 20+ products. No commitment and no charge until you upgrade.
Start Free

Product Details

Platforms Supported
Windows
Mac
Linux
Training
Documentation
Support
Online

Swiss-PdbViewer Frequently Asked Questions

Q: What kinds of users and organization types does Swiss-PdbViewer work with?
Swiss-PdbViewer works with these users and organization types: Mid Size Business, Small Business, Enterprise, Freelance, Nonprofit, Government, and Startup.
Q: What languages does Swiss-PdbViewer support in their product?
Swiss-PdbViewer supports these languages: English.
Q: What kind of support options does Swiss-PdbViewer offer?
Swiss-PdbViewer offers support via online.
Q: What type of training does Swiss-PdbViewer provide?
Swiss-PdbViewer provides training in the form of documentation.

Swiss-PdbViewer Product Features