ALEXA-Seq

ALEXA-Seq is a method for using massively parallel paired-end transcriptome sequencing for 'alternative expression analysis'.

Features

Alternative expression analysis
WTSS/RNA-Seq library quality assessment
Gene expression analysis
Novel transcript discovery
Visualization of sequence feature expression, differential expression and alternative expression

Project Activity

See All Activity >

License

GNU General Public License version 3.0 (GPLv3)

Follow ALEXA-Seq

ALEXA-Seq Web Site

Other Useful Business Software

Custom VMs From 1 to 96 vCPUs With 99.95% Uptime

General-purpose, compute-optimized, or GPU/TPU-accelerated. Built to your exact specs.

Live migration and automatic failover keep workloads online through maintenance. One free e2-micro VM every month.

Start Free

Rate This Project

User Reviews

Be the first to post a review of ALEXA-Seq!

Additional Project Details

Operating Systems

Linux

Intended Audience

Science/Research

User Interface

Console/Terminal

Programming Language

Perl, S/R, Unix Shell

Database Environment

Berkeley/Sleepycat/Gdbm (DBM), MySQL, Perl DBI/DBD

Related Categories

Unix Shell Bio-Informatics Software, Perl Bio-Informatics Software, S/R Bio-Informatics Software

Registered

2010-04-02

Similar Business Software

BioTuring Browser

Explore hundreds of curated single-cell transcriptome datasets, along with your own data, through interactive visualizations and analytics. The software also supports multimodal omics, CITE-seq, TCR-seq, and spatial transcriptomic. Interactively explore the world's largest single-cell expression...

See Software for BioTuring Browser
Photo51

Photo51 is a web-based molecular biology suite for designing and analyzing DNA and protein sequences. It supports plasmid design, automated feature annotation, virtual cloning, PCR primer design and virtual agarose gel electrophoresis. Researchers can import sequence files and use an integrated...

See Software for Photo51
OmicsBox

OmicsBox is a leading bioinformatics solution that offers end-to-end data analysis of genomes, transcriptomes, metagenomes, and genetic variation studies. The application is used by top private and public research institutions worldwide and allows researchers to easily process large and complex...

See Software for OmicsBox
MEGA

MEGA (Molecular Evolutionary Genetics Analysis) is a powerful and user-friendly software suite designed for analyzing DNA and protein sequence data from species and populations. It facilitates both automatic and manual sequence alignment, phylogenetic tree inference, and evolutionary hypothesis...

See Software for MEGA
Geneious

Geneious Prime makes bioinformatics accessible by transforming raw data into visualizations that make sequence analysis intuitive and user-friendly. Simple sequence assembly and easy editing of contigs. Automatic annotation for gene prediction, motifs, translation, and variant calling. Genotype...

See Software for Geneious
OmnibusX

In the world of biological data science, navigating vast and complex datasets can be a daunting task. Our software toolkit is designed to empower you by accelerating analysis, promoting accessibility, and providing comprehensive visualization tools to help you make sense of these intricate...

See Software for OmnibusX

Report inappropriate content